PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G21800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GATA
Protein Properties Length: 358aa    MW: 38387.2 Da    PI: 4.5395
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G21800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.31.6e-16275311135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg +   Tp++Rrgpdg++tLCnaCGl+++ kg+
  LPERR06G21800.1 275 CHHCGISAkaTPMMRRGPDGPRTLCNACGLMWANKGM 311
                      *****88889***********************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.336139174IPR010399Tify domain
SMARTSM009795.0E-12139174IPR010399Tify domain
PfamPF062004.1E-13142173IPR010399Tify domain
PROSITE profilePS5101713.404200242IPR010402CCT domain
PfamPF062038.4E-16200242IPR010402CCT domain
SMARTSM004011.3E-11269322IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.222269326IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-12273325No hitNo description
CDDcd002023.22E-14274325No hitNo description
Gene3DG3DSA:3.30.50.105.3E-16274316IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440275302IPR000679Zinc finger, GATA-type
PfamPF003204.3E-14275310IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSHHDGSKPY QPRRRPERPP PPPPPPDDAA HSGPSVDDLA AAAAASEAEA IKRYQERYGM  60
EVAEGEEDLE EEELEEEEEE EEMEEEEMGD EEEQQHHEGG GAEEEAVPMD AEAAAAAVAA  120
MGGQMDQHGT MVAAAAAVPP MASNQLTLSF QGEVYVFDSV SPDKVQAVLL LLGGRELNPG  180
LGSGASSSTS YSKRLNFPHR VASLMRFREK RKERNFDKKI RYSVRKEVAL RMQRNRGQFT  240
SSKTKGDEAT SELTASDGSP NWGSVEGRPP SAAECHHCGI SAKATPMMRR GPDGPRTLCN  300
ACGLMWANKG MLRDLSKAPP TPIQAVPSAN DGNGSDAAPA TEQEIAAPAT ANGHDSST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2433340.0AK243334.1 Oryza sativa Japonica Group cDNA, clone: J100058P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641381.11e-174PREDICTED: GATA transcription factor 20
SwissprotQ5Z4U51e-176GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A0D9WTQ40.0A0A0D9WTQ4_9ORYZ; Uncharacterized protein
STRINGLOC_Os06g48534.11e-166(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-75ZIM-LIKE 2